aquakin.FreeICConfig#

class aquakin.FreeICConfig(species, bounds=(0.001, 10000.0), prior_log_std=None)[source]#

Bases: object

Free-initial-condition settings for calibration.

Parameters:

  • species (list of str) – Species whose initial concentration is fitted alongside the parameters. For a plant, "unit.species" names.

  • bounds (tuple of float) – (lo, hi) box bounds on each fitted initial pool, in physical units (the fit runs in log space). Must satisfy 0 < lo < hi.

  • prior_log_std (float, optional) – If given, a Gaussian prior of this log-space std pulls each fitted pool toward its supplied initial value; None leaves it governed only by the data and bounds.

__init__(species, bounds=(0.001, 10000.0), prior_log_std=None)#
Parameters:

  • species (list)

  • bounds (tuple)

  • prior_log_std (float | None)

Return type:

None

Methods

__init__(species[, bounds, prior_log_std])

Attributes

bounds

prior_log_std

species